- “Multi-faceted epigenetic dysregulation of gene expression promotes esophageal squamous cell carcinoma” is published in Nature Communications (Jul. 22, 2020)
- “Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world’s leading biomass crop” is published in Giga Science (Nov. 29, 2019)
- “The human body at cellular resolution: the NIH Human Biomolecular Atlas Program” is published in Nature (Oct. 10, 2019)
- I am attending CMCM HTAN F2F meeting, Bethesda, Melyland. I will have highlight poster talk and poster(#32). (Nov 18-20, 2019)
- I attended HTAN Junior Investigator Meeting, Bethesda, Melyland. (Aug 26-27, 2019)
- I attended HTAN F2F meeting, Broad Institute, Cambridge, MA (June 25-26, 2019)
- I attended CEGS Meeting, Chicago, Il and had a poster presented. (Nov. 19-20, 2018)
- “Lifelong physical activity is associated with promoter hypomethylation of genes involved in metabolism, myogenesis, contractile properties and oxidative stress resistance in aged human skeletal muscle” is published in Scientific Reports. (03/01/2019)
- “Piercing the dark matter: bioinformatics of long-range sequencing and mapping” is published in Nature Reviews Genetics. (03/26/2018)
- I had a talk titled “MethylMarker: The Predictive DNA Methylation Marker Selection Algorithm for Liquid Biopsy”, Algorithmic Challenges in Genomics Reunion @ Simons Institute for the theory of computing, University of California, Berkeley. (Jun 27–30, 2017)
- I joined Snyder Lab @ Stanford University. (09/01/2016)
- I gave a talk about “DeepBind Method Details“, Deep Learning for Computational Biology. (04/08/2016)
- I gave a talk about “Spectral clustering“, Bioinformatics group meeting, JGI (03/29/2016)
- I gave a talk of “Long read sequencing technologies and its applications“, Genomics Program Biotechnology Companies Day. (03/15/2016)
- I am organizing “Genomics Program Biotechnology Companies Day“, Calvin Lab Auditorium, University of California, Berkeley. March 18th (9am-5pm). Here is the announcement at Lawrence Berkeley National Laboratory as well. (03/15/2016)
- “The pineapple genome and the evolution of CAM photosynthesis” is published online in Nature Genetics. (11/2/2015)
- “The resurgence of reference quality genomes” poster for the Genome Informatics meeting, CSHL is here. (10/31/2015)
- “The resurgence of reference quality genomes” slides for my talk at Probabilistic Modeling in Genomics meeting is here. (10/15/2015)
- “The resurgence of reference quality genomes” has been selected for a platform presentation for the Probabilistic Modeling in Genomics meeting. (09/17/2015)
- “The pineapple genome reveals the evolution of CAM photosynthesis” paper is accepted for publication by NG. (09/15/2015)
- MGM (Microbial Genomics & Metagenomics) workshop will be held on September 14 – 18, 2015 (09/03/2015)
- I started a new position at DOE Joint Genome Institute, Lawrence Berkeley National Laboratory as a postdoctoral fellow, funded by Simons Postdoctoral Fellowship (08/24/2015)
- I finished my defense successfully. Slides are here with annotations. (08/11/2015)
- Quality genome paper is submitted. (07/01/2015)
- My defense is scheduled on mid-August. (06/29/2015)
- Pineapple paper is submitted. (06/28/2015)
- I gave a talk in Graduate Student Symposium, CSHL. (05/18/2015)
- I successfully presented my thesis proposal “Long Read Sequencing Technology, Altorithms and applications”. (05/04/2015)
- My presentation slide about “MLE and its recent application in computational biology” is posted. (03/17/2015)
- I will give a presentation about “Sugarcane Genome De Novo Assemblly Challenges” at the Sugar Cane Sequencing Initiativeworkshop, PAG XXIII. (12/24/2014)
- ReadSim1.6 is released with improved speed and a new feature, dnasim, which simulates heterozygous polyploidy genome. (11/21/2014)
- My talk “Sugarcane genome de novo assembly challenges” is selected as a platform presentaion for data mining session, Biological Data Science Meeting, CSHL (11/05/2014-11/08/2014) All of the presentations and talks are listed I’ll serve as a program comittee member forCancer Panomics in Pacific Symposium on Biocomputing (PSB) 2015
- My internship in Microsoft Research, Redmond, WA started. (June – Aug, 2014)
- I’ll serve as a program comittee member for Cancer Panomics in Pacific Symposium on Biocomputing (PSB) 2014
